IL_9D0J_310
3D structure
- PDB id
- 9D0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D0J_310 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.2368
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9D0J|1|2a|U|605
9D0J|1|2a|G|606
9D0J|1|2a|A|607
9D0J|1|2a|A|608
9D0J|1|2a|A|609
9D0J|1|2a|G|610
9D0J|1|2a|A|611
9D0J|1|2a|C|612
*
9D0J|1|2a|G|628
9D0J|1|2a|G|629
9D0J|1|2a|G|630
9D0J|1|2a|G|631
9D0J|1|2a|A|632
9D0J|1|2a|G|633
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2d
- 30S ribosomal protein S4
- Chain 2h
- 30S ribosomal protein S8
- Chain 2p
- 30S ribosomal protein S16
- Chain 2q
- 30S ribosomal protein S17
Coloring options: