IL_9D5K_002

3D structure

PDB id

9D5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing an expanded cytidine analog at the -1 position of the guide strand

Experimental method

X-RAY DIFFRACTION

Resolution

2.697 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D5K_002 not in the Motif Atlas

Geometric match to IL_8E4X_001

Geometric discrepancy: 0.0954

The information below is about IL_8E4X_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9D5K|1|C|G|14
9D5K|1|C|A|15
9D5K|1|C|G|16
*
9D5K|1|D|C|17
9D5K|1|D|C|18
9D5K|1|D|C|19

Current chains

Chain C

RNA Top Strand

Chain D

RNA Bottom Strand

Nearby chains

Chain A

Isoform 4 of Double-stranded RNA-specific editase 1

Chain B

Isoform 4 of Double-stranded RNA-specific editase 1