IL_9D7R_257

3D structure

PDB id

9D7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9D7R|1|2A|G|2168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7R_257 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3444

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9D7R|1|2A|G|2124
9D7R|1|2A|G|2125
9D7R|1|2A|A|2126
9D7R|1|2A|G|2127
*
9D7R|1|2A|C|2161
9D7R|1|2A|G|2162
9D7R|1|2A|C|2163
9D7R|1|2A|C|2164
9D7R|1|2A|G|2165
9D7R|1|2A|G|2166
9D7R|1|2A|U|2167
9D7R|1|2A|G|2168
9D7R|1|2A|A|2169
9D7R|1|2A|A|2170
9D7R|1|2A|A|2171
9D7R|1|2A|U|2172
9D7R|1|2A|A|2173
9D7R|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA