IL_9D7S_004

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

9D7S|1|1A|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_004 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.0659

The information below is about IL_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9D7S|1|1A|G|81
9D7S|1|1A|G|82
9D7S|1|1A|G|83
9D7S|1|1A|A|84
9D7S|1|1A|G|85
*
9D7S|1|1A|C|97
9D7S|1|1A|G|98
9D7S|1|1A|U|99
9D7S|1|1A|G|100
9D7S|1|1A|G|102
9D7S|1|1A|A|103
9D7S|1|1A|U|104
9D7S|1|1A|C|105

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L29

Chain 1Y

50S ribosomal protein L24