IL_9D7S_004
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9D7S|1|1A|G|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7S_004 not in the Motif Atlas
- Homologous match to IL_9DFE_004
- Geometric discrepancy: 0.0659
- The information below is about IL_9DFE_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9D7S|1|1A|G|81
9D7S|1|1A|G|82
9D7S|1|1A|G|83
9D7S|1|1A|A|84
9D7S|1|1A|G|85
*
9D7S|1|1A|C|97
9D7S|1|1A|G|98
9D7S|1|1A|U|99
9D7S|1|1A|G|100
9D7S|1|1A|G|102
9D7S|1|1A|A|103
9D7S|1|1A|U|104
9D7S|1|1A|C|105
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: