IL_9D7S_084

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_084 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.2691

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9D7S|1|1A|G|2110
9D7S|1|1A|C|2111
9D7S|1|1A|G|2112
9D7S|1|1A|U|2113
9D7S|1|1A|A|2114
9D7S|1|1A|G|2115
9D7S|1|1A|G|2116
9D7S|1|1A|A|2117
9D7S|1|1A|U|2118
9D7S|1|1A|A|2119
9D7S|1|1A|G|2120
*
9D7S|1|1A|C|2178
9D7S|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA