IL_9D7S_098

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

9D7S|1|1A|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_098 not in the Motif Atlas

Homologous match to IL_9DFE_099

Geometric discrepancy: 0.0728

The information below is about IL_9DFE_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

9D7S|1|1A|U|2522
9D7S|1|1A|G|2523
*
9D7S|1|1A|C|2540
9D7S|1|1A|A|2541
9D7S|1|1A|A|2542
9D7S|1|1A|G|2543

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1N

50S ribosomal protein L13