Motif IL_94991.3 Version IL_94991.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_009 | 1U6B | 0.6165 | 1 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 150 | * | U | 162 | G | 163 | cWW | cWW | ||
| 2 | IL_5XTM_005 | 5XTM | 0.6052 | 1 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 41 | U | 42 | A | 44 | * | U | 5 | G | 6 | cWW | cWW | ||
| 3 | IL_4PCJ_003 | 4PCJ | 0.6298 | 1 | Major groove platform with intercalated tWH | A | trCUG-3('5) | C | 8 | U | 9 | A | 11 | * | U | 27 | G | 28 | cWW | cWW | ||
| 4 | IL_5VCI_003 | 5VCI | 0.6337 | 1 | Major groove platform with intercalated tWH | A+B | RNA (22-mer) + RNA (12-mer) | C | 8 | U | 9 | A | 11 | * | U | 4 | G | 5 | cWW | cWW | ||
| 5 | IL_5DCV_006 | 5DCV | 0.5933 | 1 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 45 | U | 46 | A | 48 | * | U | 5 | G | 6 | cWW | cWW | ||
| 6 | IL_7VTI_002 | 7VTI | 0.4433 | 2 | B | crRNA | G | 5 | A | 6 | A | 9 | * | U | 30 | U | 31 | cWW | cWW | |||
| 7 | IL_7A0S_091 | 7A0S | 0.1072 | 1 | Major groove platform with intercalation | X | LSU rRNA | C | 2519 | A | 2520 | G | 2522 | * | U | 2501 | G | 2502 | cWW | cWW | ||
| 8 | IL_8B0X_157 | 8B0X | 0.0835 | 1 | Major groove platform with intercalation (H) | a | LSU rRNA | C | 2544 | A | 2545 | G | 2547 | * | U | 2526 | G | 2527 | cWW | tSH | cWW | |
| 9 | IL_9E6Q_091 | 9E6Q | 0.0000 | 1 | Major groove platform with intercalation (H) | 1 | LSU rRNA | C | 2654 | A | 2655 | G | 2657 | * | U | 2636 | G | 2637 | cWW | ntSH | cWW | |
| 10 | IL_4WF9_097 | 4WF9 | 0.0625 | 1 | Major groove platform with intercalation | X | LSU rRNA | C | 2567 | A | 2568 | G | 2570 | * | U | 2549 | G | 2550 | cWW | ntSH | cWW | |
| 11 | IL_9DFE_099 | 9DFE | 0.1187 | 1 | 1A | LSU rRNA | C | 2540 | A | 2541 | G | 2543 | * | U | 2522 | G | 2523 | cWW | ntSH | cWW | ||
| 12 | IL_4V9F_089 | 4V9F | 0.1401 | 1 | Major groove platform with intercalation | 0 | LSU rRNA | C | 2575 | A | 2576 | G | 2578 | * | U | 2557 | G | 2558 | cWW | ntSH | cWW | |
| 13 | IL_9AXU_103 | 9AXU | 0.2355 | 1 | Major groove platform with intercalation (H) | 2 | LSU rRNA | U | 3004 | A | 3005 | G | 3007 | * | U | 2986 | A | 2987 | cWW | ntSH | cWW | |
| 14 | IL_9PN5_107 | 9PN5 | 0.2928 | 1 | A1 | LSU rRNA | U | 2909 | A | 2910 | G | 2912 | * | U | 2891 | A | 2892 | cWW | ntSH | cWW | ||
| 15 | IL_8OI5_111 | 8OI5 | 0.3555 | 1 | Major groove platform with intercalation (H) | 1 | LSU rRNA | U | 2881 | A | 2882 | G | 2884 | * | U | 2863 | A | 2864 | cWW | ntSH | cWW | |
| 16 | IL_4KQY_004 | 4KQY | 0.4266 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 73 | A | 74 | G | 76 | * | C | 49 | G | 50 | cWW | ncSH | cWW | |
| 17 | IL_9E6Q_011 | 9E6Q | 0.5233 | 1 | 1 | LSU rRNA | G | 397 | G | 398 | C | 400 | * | G | 296 | C | 297 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*UG | 6 |
| CUAA*UG | 5 |
| UAAG*UA | 3 |
| GAGCA*UU | 1 |
| CAAG*CG | 1 |
| GGUC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 10 |
| UA* | 5 |
| AGC* | 1 |
| GU* | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with intercalated tWH (5)
- (4)
- Major groove platform with intercalation (H) (4)
- Major groove platform with intercalation (3)
- Minor groove platform (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.45 | Max 0.85
Coloring options: