IL_9D7S_219

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_219 not in the Motif Atlas

Homologous match to IL_9DFE_048

Geometric discrepancy: 0.0466

The information below is about IL_9DFE_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9D7S|1|2A|A|1262
9D7S|1|2A|U|1263
9D7S|1|2A|G|1264
9D7S|1|2A|A|1265
9D7S|1|2A|G|1266
9D7S|1|2A|U|1267
9D7S|1|2A|A|1268
9D7S|1|2A|A|1269
*
9D7S|1|2A|U|2011
9D7S|1|2A|G|2012
9D7S|1|2A|A|2013
9D7S|1|2A|A|2014
9D7S|1|2A|A|2015
9D7S|1|2A|U|2016
9D7S|1|2A|U|2017

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22