IL_9D7S_268

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9D7S|1|2A|G|2576, 9D7S|1|2A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_268 not in the Motif Atlas

Homologous match to IL_9DFE_097

Geometric discrepancy: 0.0794

The information below is about IL_9DFE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9D7S|1|2A|C|2510
9D7S|1|2A|U|2511
9D7S|1|2A|C|2512
*
9D7S|1|2A|G|2574
9D7S|1|2A|C|2575
9D7S|1|2A|G|2576
9D7S|1|2A|A|2577
9D7S|1|2A|G|2578

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2w

Peptide chain release factor 1

Chain 2z

Api Antimicrobial Peptide