IL_9D7S_269

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

9D7S|1|2A|A|2572, 9D7S|1|2A|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_269 not in the Motif Atlas

Homologous match to IL_4WF9_096

Geometric discrepancy: 0.2067

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9D7S|1|2A|C|2512
9D7S|1|2A|G|2513
*
9D7S|1|2A|C|2571
9D7S|1|2A|A|2572
9D7S|1|2A|C|2573
9D7S|1|2A|G|2574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2w

Peptide chain release factor 1

Chain 2z

Api Antimicrobial Peptide