IL_9D7S_272

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

9D7S|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_272 not in the Motif Atlas

Homologous match to IL_9DFE_101

Geometric discrepancy: 0.0729

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9D7S|1|2A|U|2636
9D7S|1|2A|U|2637
9D7S|1|2A|G|2638
9D7S|1|2A|A|2639
9D7S|1|2A|G|2640
*
9D7S|1|2A|C|2774
9D7S|1|2A|A|2775
9D7S|1|2A|A|2776
9D7S|1|2A|G|2777
9D7S|1|2A|A|2778
9D7S|1|2A|U|2779
9D7S|1|2A|G|2780
9D7S|1|2A|A|2781
9D7S|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13