IL_9D7S_333
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9D7S|1|2a|A|1286
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7S_333 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1921
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9D7S|1|2a|U|1247
9D7S|1|2a|A|1248
9D7S|1|2a|C|1249
9D7S|1|2a|A|1250
9D7S|1|2a|A|1251
9D7S|1|2a|A|1252
9D7S|1|2a|G|1253
*
9D7S|1|2a|C|1284
9D7S|1|2a|A|1285
9D7S|1|2a|A|1286
9D7S|1|2a|A|1287
9D7S|1|2a|A|1288
9D7S|1|2a|A|1289
9D7S|1|2a|G|1290
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2g
- 30S ribosomal protein S7
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2u
- 30S ribosomal protein Thx
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