IL_9D7T_045

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9D7T|1|1A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_045 not in the Motif Atlas

Homologous match to IL_9DFE_046

Geometric discrepancy: 0.0553

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9D7T|1|1A|C|1208
9D7T|1|1A|G|1209
9D7T|1|1A|A|1210
9D7T|1|1A|U|1211
9D7T|1|1A|G|1212
9D7T|1|1A|A|1213
9D7T|1|1A|A|1214
9D7T|1|1A|G|1215
*
9D7T|1|1A|U|1234
9D7T|1|1A|G|1235
9D7T|1|1A|G|1236
9D7T|1|1A|A|1237
9D7T|1|1A|G|1238

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20