IL_9D7T_084

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_084 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3141

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9D7T|1|1A|G|2110
9D7T|1|1A|C|2111
9D7T|1|1A|G|2112
9D7T|1|1A|U|2113
9D7T|1|1A|A|2114
9D7T|1|1A|G|2115
9D7T|1|1A|G|2116
9D7T|1|1A|A|2117
9D7T|1|1A|U|2118
9D7T|1|1A|A|2119
9D7T|1|1A|G|2120
*
9D7T|1|1A|C|2178
9D7T|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA