3D structure

PDB id
9D7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGAG*CGCCGGUGAAAUAC
Length
18 nucleotides
Bulged bases
9D7T|1|1A|U|2167
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9D7T_085 not in the Motif Atlas
Homologous match to IL_3U4M_003
Geometric discrepancy: 0.4207
The information below is about IL_3U4M_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75283.2
Basepair signature
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
Number of instances in this motif group
3

Unit IDs

9D7T|1|1A|G|2124
9D7T|1|1A|G|2125
9D7T|1|1A|A|2126
9D7T|1|1A|G|2127
*
9D7T|1|1A|C|2161
9D7T|1|1A|G|2162
9D7T|1|1A|C|2163
9D7T|1|1A|C|2164
9D7T|1|1A|G|2165
9D7T|1|1A|G|2166
9D7T|1|1A|U|2167
9D7T|1|1A|G|2168
9D7T|1|1A|A|2169
9D7T|1|1A|A|2170
9D7T|1|1A|A|2171
9D7T|1|1A|U|2172
9D7T|1|1A|A|2173
9D7T|1|1A|C|2174

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1y
Transfer RNA; tRNA

Coloring options:


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