IL_9D7T_213

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9D7T|1|2A|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_213 not in the Motif Atlas

Homologous match to IL_9DFE_040

Geometric discrepancy: 0.1015

The information below is about IL_9DFE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9D7T|1|2A|G|1031
9D7T|1|2A|A|1032
9D7T|1|2A|U|1033
9D7T|1|2A|G|1034
*
9D7T|1|2A|C|1121
9D7T|1|2A|G|1122
9D7T|1|2A|C|1123

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16