IL_9D7T_281

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAACC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_281 not in the Motif Atlas

Homologous match to IL_9DFE_111

Geometric discrepancy: 0.1232

The information below is about IL_9DFE_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.4

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9D7T|1|2B|G|23
9D7T|1|2B|G|24
9D7T|1|2B|A|25
9D7T|1|2B|A|26
9D7T|1|2B|C|27
9D7T|1|2B|C|28
*
9D7T|1|2B|G|56
9D7T|1|2B|A|57
9D7T|1|2B|A|58
9D7T|1|2B|A|59
9D7T|1|2B|C|60

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18