IL_9D89_001
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_001 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.0362
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9D89|1|D|G|24
9D89|1|D|U|25
9D89|1|D|G|26
9D89|1|D|G|27
9D89|1|D|A|28
9D89|1|D|U|29
9D89|1|D|G|30
*
9D89|1|D|C|510
9D89|1|D|U|511
9D89|1|D|G|512
9D89|1|D|A|513
9D89|1|D|A|514
9D89|1|D|A|515
9D89|1|D|C|516
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L32
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- 50S ribosomal protein L22
Coloring options: