IL_9D89_002

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9D89|1|D|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_002 not in the Motif Atlas

Homologous match to IL_5J7L_246

Geometric discrepancy: 0.0565

The information below is about IL_5J7L_246

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

9D89|1|D|G|36
9D89|1|D|C|37
*
9D89|1|D|G|442
9D89|1|D|A|443
9D89|1|D|C|444

Current chains

Chain D

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L4

Chain p

Large ribosomal subunit protein bL20