IL_9D89_009

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4443

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9D89|1|D|C|274
9D89|1|D|C|275
9D89|1|D|U|276
9D89|1|D|G|277
9D89|1|D|A|278
9D89|1|D|A|279
9D89|1|D|U|280
9D89|1|D|C|281
*
9D89|1|D|G|359
9D89|1|D|U|360
9D89|1|D|G|361
9D89|1|D|A|362
9D89|1|D|G|363

Current chains

Chain D

23S rRNA

Nearby chains