IL_9D89_011

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

9D89|1|D|A|504, 9D89|1|D|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0618

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

9D89|1|D|G|481
9D89|1|D|A|482
9D89|1|D|A|483
9D89|1|D|C|484
*
9D89|1|D|G|496
9D89|1|D|A|497
9D89|1|D|G|498
9D89|1|D|U|499
9D89|1|D|G|500
9D89|1|D|A|501
9D89|1|D|A|502
9D89|1|D|A|503
9D89|1|D|A|504
9D89|1|D|A|505
9D89|1|D|G|506
9D89|1|D|A|507
9D89|1|D|A|508
9D89|1|D|C|509

Current chains

Chain D

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain t

Large ribosomal subunit protein uL24