IL_9D89_036
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9D89|1|D|A|1129, 9D89|1|D|U|1132
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_036 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.0497
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9D89|1|D|G|1026
9D89|1|D|G|1027
9D89|1|D|G|1028
9D89|1|D|A|1029
9D89|1|D|A|1030
9D89|1|D|A|1031
9D89|1|D|C|1032
*
9D89|1|D|G|1126
9D89|1|D|G|1127
9D89|1|D|A|1128
9D89|1|D|A|1129
9D89|1|D|G|1130
9D89|1|D|A|1131
9D89|1|D|U|1132
9D89|1|D|G|1133
9D89|1|D|U|1134
9D89|1|D|A|1135
9D89|1|D|A|1136
9D89|1|D|C|1137
9D89|1|D|G|1138
9D89|1|D|G|1139
9D89|1|D|G|1140
9D89|1|D|G|1141
9D89|1|D|C|1142
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L3
- Chain i
- Large ribosomal subunit protein uL13
- Chain l
- 50S ribosomal protein L16
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