IL_9D89_042
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_042 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0443
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9D89|1|D|A|1264
9D89|1|D|U|1265
9D89|1|D|A|1266
9D89|1|D|A|1267
9D89|1|D|G|1268
9D89|1|D|U|1269
9D89|1|D|A|1270
9D89|1|D|A|1271
*
9D89|1|D|U|2015
9D89|1|D|G|2016
9D89|1|D|A|2017
9D89|1|D|A|2018
9D89|1|D|A|2019
9D89|1|D|U|2020
9D89|1|D|U|2021
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain H
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L32
- Chain T
- Rumicidin-2 (12-27)
- Chain r
- 50S ribosomal protein L22
Coloring options: