IL_9D89_046

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_046 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0597

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9D89|1|D|C|1359
9D89|1|D|G|1360
9D89|1|D|A|1361
9D89|1|D|G|1362
9D89|1|D|G|1363
*
9D89|1|D|C|1372
9D89|1|D|G|1373
9D89|1|D|U|1374
9D89|1|D|A|1375
9D89|1|D|G|1376

Current chains

Chain D

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain F

50S ribosomal protein L2

Chain w

50S ribosomal protein L28