IL_9D89_061
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9D89|1|D|G|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_061 not in the Motif Atlas
- Homologous match to IL_5J7L_307
- Geometric discrepancy: 0.0289
- The information below is about IL_5J7L_307
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
9D89|1|D|A|1671
9D89|1|D|C|1672
9D89|1|D|U|1673
9D89|1|D|A|1674
9D89|1|D|G|1675
9D89|1|D|G|1676
*
9D89|1|D|C|1994
9D89|1|D|U|1995
9D89|1|D|G|1996
9D89|1|D|U|1997
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
Coloring options: