IL_9D89_062
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 9D89|1|D|G|1701
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_062 not in the Motif Atlas
- Homologous match to IL_5J7L_308
- Geometric discrepancy: 0.0429
- The information below is about IL_5J7L_308
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9D89|1|D|C|1688
9D89|1|D|G|1689
9D89|1|D|U|1690
9D89|1|D|A|1691
9D89|1|D|A|1692
9D89|1|D|C|1693
*
9D89|1|D|G|1698
9D89|1|D|G|1699
9D89|1|D|A|1700
9D89|1|D|G|1701
9D89|1|D|A|1702
9D89|1|D|A|1703
9D89|1|D|G|1704
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
Coloring options: