IL_9D89_063

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9D89|1|D|U|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_063 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1064

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9D89|1|D|U|1714
9D89|1|D|A|1715
9D89|1|D|U|1716
9D89|1|D|G|1717
9D89|1|D|U|1718
9D89|1|D|A|1719
9D89|1|D|G|1720
*
9D89|1|D|U|1744
9D89|1|D|G|1745
9D89|1|D|A|1746
9D89|1|D|A|1747
9D89|1|D|A|1748

Current chains

Chain D

23S rRNA

Nearby chains