IL_9D89_069
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAAG*CC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_069 not in the Motif Atlas
- Homologous match to IL_5J7L_316
- Geometric discrepancy: 0.313
- The information below is about IL_5J7L_316
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
9D89|1|D|G|1848
9D89|1|D|A|1849
9D89|1|D|A|1850
9D89|1|D|G|1851
*
9D89|1|D|C|1897
9D89|1|D|C|1898
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
Coloring options: