IL_9D89_073

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

9D89|1|D|A|1942, 9D89|1|D|U|1948, 9D89|1|D|U|1967

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_073 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.0377

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9D89|1|D|C|1938
9D89|1|D|G|1939
9D89|1|D|A|1940
9D89|1|D|A|1941
9D89|1|D|A|1942
9D89|1|D|5MU|1943
9D89|1|D|U|1944
9D89|1|D|C|1945
9D89|1|D|C|1946
9D89|1|D|U|1947
9D89|1|D|U|1948
9D89|1|D|G|1949
*
9D89|1|D|C|1965
9D89|1|D|5MC|1966
9D89|1|D|U|1967
9D89|1|D|G|1968

Current chains

Chain D

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L2