IL_9D89_077
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- AA*UACU
- Length
- 6 nucleotides
- Bulged bases
- 9D89|1|D|A|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_077 not in the Motif Atlas
- Homologous match to IL_5J7L_324
- Geometric discrepancy: 0.0556
- The information below is about IL_5J7L_324
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
9D89|1|D|A|2074
9D89|1|D|A|2075
*
9D89|1|D|U|2442
9D89|1|D|A|2443
9D89|1|D|C|2444
9D89|1|D|U|2445
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
- Chain T
- Rumicidin-2 (12-27)
Coloring options: