3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
AA*UACU
Length
6 nucleotides
Bulged bases
9D89|1|D|A|2443
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9D89_077 not in the Motif Atlas
Homologous match to IL_5J7L_324
Geometric discrepancy: 0.0556
The information below is about IL_5J7L_324
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

9D89|1|D|A|2074
9D89|1|D|A|2075
*
9D89|1|D|U|2442
9D89|1|D|A|2443
9D89|1|D|C|2444
9D89|1|D|U|2445

Current chains

Chain D
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L2
Chain T
Rumicidin-2 (12-27)

Coloring options:


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