IL_9D89_078

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9D89|1|D|G|2242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_078 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0705

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9D89|1|D|U|2085
9D89|1|D|A|2086
9D89|1|D|G|2087
*
9D89|1|D|U|2240
9D89|1|D|G|2241
9D89|1|D|G|2242
9D89|1|D|G|2243

Current chains

Chain D

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L2

Chain w

50S ribosomal protein L28