IL_9D89_082

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_082 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0498

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9D89|1|D|C|2354
9D89|1|D|G|2355
9D89|1|D|A|2356
9D89|1|D|G|2357
*
9D89|1|D|C|2368
9D89|1|D|G|2369
9D89|1|D|A|2370
9D89|1|D|G|2371

Current chains

Chain D

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L35

Chain L

50S ribosomal protein L27

Chain n

50S ribosomal protein L18