IL_9D89_087
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- 9D89|1|D|U|2495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_087 not in the Motif Atlas
- Homologous match to IL_4WF9_092
- Geometric discrepancy: 0.1784
- The information below is about IL_4WF9_092
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
9D89|1|D|A|2463
9D89|1|D|U|2464
9D89|1|D|A|2465
*
9D89|1|D|U|2493
9D89|1|D|G|2494
9D89|1|D|U|2495
9D89|1|D|U|2496
9D89|1|D|U|2497
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain l
- 50S ribosomal protein L16
Coloring options: