3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
9D89|1|D|U|2495
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9D89_087 not in the Motif Atlas
Homologous match to IL_4WF9_092
Geometric discrepancy: 0.1784
The information below is about IL_4WF9_092
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.3
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
21

Unit IDs

9D89|1|D|A|2463
9D89|1|D|U|2464
9D89|1|D|A|2465
*
9D89|1|D|U|2493
9D89|1|D|G|2494
9D89|1|D|U|2495
9D89|1|D|U|2496
9D89|1|D|U|2497

Current chains

Chain D
23S rRNA

Nearby chains

Chain l
50S ribosomal protein L16

Coloring options:


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