IL_9D89_088
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_088 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.0634
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
9D89|1|D|C|2470
9D89|1|D|C|2471
9D89|1|D|A|2472
9D89|1|D|A|2473
9D89|1|D|G|2474
*
9D89|1|D|C|2484
9D89|1|D|G|2485
9D89|1|D|A|2486
9D89|1|D|C|2487
9D89|1|D|G|2488
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L36
- Chain l
- 50S ribosomal protein L16
Coloring options: