IL_9D89_098

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

9D89|1|D|C|2716, 9D89|1|D|U|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_098 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.0641

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9D89|1|D|U|2699
9D89|1|D|U|2700
*
9D89|1|D|A|2715
9D89|1|D|C|2716
9D89|1|D|U|2717
9D89|1|D|G|2718

Current chains

Chain D

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L17

Chain o

50S ribosomal protein L19