IL_9D89_101
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CUGAAG*CGUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_101 not in the Motif Atlas
- Homologous match to IL_5J7L_351
- Geometric discrepancy: 0.068
- The information below is about IL_5J7L_351
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29471.1
- Basepair signature
- cWW-cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9D89|1|D|C|2810
9D89|1|D|U|2811
9D89|1|D|G|2812
9D89|1|D|A|2813
9D89|1|D|A|2814
9D89|1|D|G|2815
*
9D89|1|D|C|2893
9D89|1|D|G|2894
9D89|1|D|U|2895
9D89|1|D|G|2896
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L22
Coloring options: