IL_9DFC_093
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 9DFC|1|1A|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_093 not in the Motif Atlas
- Homologous match to IL_9DFE_094
- Geometric discrepancy: 0.0699
- The information below is about IL_9DFE_094
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36931.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 23
Unit IDs
9DFC|1|1A|A|2459
9DFC|1|1A|U|2460
9DFC|1|1A|C|2461
*
9DFC|1|1A|G|2489
9DFC|1|1A|G|2490
9DFC|1|1A|U|2491
9DFC|1|1A|U|2492
9DFC|1|1A|U|2493
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1w
- Transfer RNA; tRNA
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