IL_9DFC_101

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_101 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0695

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9DFC|1|1A|C|2652
9DFC|1|1A|U|2653
9DFC|1|1A|A|2654
9DFC|1|1A|G|2655
9DFC|1|1A|U|2656
9DFC|1|1A|A|2657
9DFC|1|1A|C|2658
*
9DFC|1|1A|G|2663
9DFC|1|1A|G|2664
9DFC|1|1A|A|2665
9DFC|1|1A|C|2666
9DFC|1|1A|C|2667
9DFC|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6