IL_9DFC_110
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAACC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_110 not in the Motif Atlas
- Homologous match to IL_9DFE_111
- Geometric discrepancy: 0.0841
- The information below is about IL_9DFE_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DFC|1|1B|G|23
9DFC|1|1B|G|24
9DFC|1|1B|A|25
9DFC|1|1B|A|26
9DFC|1|1B|C|27
9DFC|1|1B|C|28
*
9DFC|1|1B|G|56
9DFC|1|1B|A|57
9DFC|1|1B|A|58
9DFC|1|1B|A|59
9DFC|1|1B|C|60
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
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