IL_9DFC_134
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9DFC|1|1a|A|532, 9DFC|1|1a|U|534, 9DFC|1|1a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_134 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1647
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9DFC|1|1a|G|515
9DFC|1|1a|PSU|516
9DFC|1|1a|G|517
9DFC|1|1a|C|518
9DFC|1|1a|C|519
9DFC|1|1a|A|520
9DFC|1|1a|G|521
*
9DFC|1|1a|C|528
9DFC|1|1a|G|529
9DFC|1|1a|G|530
9DFC|1|1a|U|531
9DFC|1|1a|A|532
9DFC|1|1a|A|533
9DFC|1|1a|U|534
9DFC|1|1a|A|535
9DFC|1|1a|C|536
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
- Chain 1v
- MET-PHE-mRNA
- Chain 1w
- Transfer RNA; tRNA
- Chain 1z
- Lasso peptide lariocidin
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