3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
9DFC|1|2A|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9DFC_207 not in the Motif Atlas
Homologous match to IL_4WF9_036
Geometric discrepancy: 0.0694
The information below is about IL_4WF9_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

9DFC|1|2A|C|998
9DFC|1|2A|U|999
9DFC|1|2A|A|1000
9DFC|1|2A|A|1001
9DFC|1|2A|G|1002
*
9DFC|1|2A|C|1153
9DFC|1|2A|G|1154
9DFC|1|2A|A|1155
9DFC|1|2A|A|1156
9DFC|1|2A|G|1157

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 23
50S ribosomal protein L30
Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2U
50S ribosomal protein L20
Chain 2V
50S ribosomal protein L21

Coloring options:


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