IL_9DFC_207
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 9DFC|1|2A|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_207 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0694
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
9DFC|1|2A|C|998
9DFC|1|2A|U|999
9DFC|1|2A|A|1000
9DFC|1|2A|A|1001
9DFC|1|2A|G|1002
*
9DFC|1|2A|C|1153
9DFC|1|2A|G|1154
9DFC|1|2A|A|1155
9DFC|1|2A|A|1156
9DFC|1|2A|G|1157
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 23
- 50S ribosomal protein L30
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2U
- 50S ribosomal protein L20
- Chain 2V
- 50S ribosomal protein L21
Coloring options: