IL_9DFC_312

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

9DFC|1|2a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_312 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0786

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9DFC|1|2a|G|662
9DFC|1|2a|A|663
9DFC|1|2a|G|664
9DFC|1|2a|A|665
9DFC|1|2a|G|666
*
9DFC|1|2a|U|740
9DFC|1|2a|G|741
9DFC|1|2a|G|742
9DFC|1|2a|U|743

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2f

30S ribosomal protein S6

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18