IL_9DFD_004
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9DFD|1|1A|G|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFD_004 not in the Motif Atlas
- Homologous match to IL_9DFE_004
- Geometric discrepancy: 0.0729
- The information below is about IL_9DFE_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9DFD|1|1A|G|81
9DFD|1|1A|G|82
9DFD|1|1A|G|83
9DFD|1|1A|A|84
9DFD|1|1A|G|85
*
9DFD|1|1A|C|97
9DFD|1|1A|G|98
9DFD|1|1A|U|99
9DFD|1|1A|G|100
9DFD|1|1A|G|102
9DFD|1|1A|A|103
9DFD|1|1A|U|104
9DFD|1|1A|C|105
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 1Y
- 50S ribosomal protein L24
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