IL_9DFD_010

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

9DFD|1|1A|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFD_010 not in the Motif Atlas

Homologous match to IL_9DFE_010

Geometric discrepancy: 0.1065

The information below is about IL_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9DFD|1|1A|C|288
9DFD|1|1A|A|289
9DFD|1|1A|G|290
*
9DFD|1|1A|U|350
9DFD|1|1A|G|351
9DFD|1|1A|G|352
9DFD|1|1A|G|353

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains