IL_9DFD_046
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFD_046 not in the Motif Atlas
- Homologous match to IL_9DFE_048
- Geometric discrepancy: 0.0563
- The information below is about IL_9DFE_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9DFD|1|1A|A|1262
9DFD|1|1A|U|1263
9DFD|1|1A|G|1264
9DFD|1|1A|A|1265
9DFD|1|1A|G|1266
9DFD|1|1A|U|1267
9DFD|1|1A|A|1268
9DFD|1|1A|A|1269
*
9DFD|1|1A|U|2011
9DFD|1|1A|G|2012
9DFD|1|1A|A|2013
9DFD|1|1A|A|2014
9DFD|1|1A|A|2015
9DFD|1|1A|U|2016
9DFD|1|1A|U|2017
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1F
- 50S ribosomal protein L4
- Chain 1W
- 50S ribosomal protein L22
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