IL_9DFD_066
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 9DFD|1|1A|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFD_066 not in the Motif Atlas
- Homologous match to IL_9DFE_068
- Geometric discrepancy: 0.0556
- The information below is about IL_9DFE_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
9DFD|1|1A|C|1686
9DFD|1|1A|G|1687
9DFD|1|1A|U|1688
9DFD|1|1A|A|1689
9DFD|1|1A|A|1690
9DFD|1|1A|C|1691
*
9DFD|1|1A|G|1696
9DFD|1|1A|G|1697
9DFD|1|1A|A|1698
9DFD|1|1A|G|1699
9DFD|1|1A|A|1700
9DFD|1|1A|A|1701
9DFD|1|1A|G|1702
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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