IL_9DFD_252

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

9DFD|1|2A|G|2115, 9DFD|1|2A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFD_252 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3525

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9DFD|1|2A|G|2110
9DFD|1|2A|C|2111
9DFD|1|2A|G|2112
9DFD|1|2A|U|2113
9DFD|1|2A|A|2114
9DFD|1|2A|G|2115
9DFD|1|2A|G|2116
9DFD|1|2A|A|2117
9DFD|1|2A|U|2118
9DFD|1|2A|A|2119
9DFD|1|2A|G|2120
*
9DFD|1|2A|C|2178
9DFD|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA