IL_9DFD_271

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

9DFD|1|2A|U|2689, 9DFD|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFD_271 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.0905

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9DFD|1|2A|U|2687
9DFD|1|2A|U|2688
9DFD|1|2A|U|2689
9DFD|1|2A|C|2690
9DFD|1|2A|C|2691
*
9DFD|1|2A|G|2718
9DFD|1|2A|G|2719
9DFD|1|2A|U|2720
9DFD|1|2A|A|2721
9DFD|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19