IL_9DFD_343

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9DFD|1|1A|A|2126

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFD_343 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3697

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9DFD|1|1A|G|2124
9DFD|1|1A|G|2125
9DFD|1|1A|A|2126
9DFD|1|1A|G|2127
*
9DFD|1|1A|C|2161
9DFD|1|1A|G|2162
9DFD|1|1A|C|2163
9DFD|1|1A|C|2164
9DFD|1|1A|G|2165
9DFD|1|1A|G|2166
9DFD|1|1A|U|2167
9DFD|1|1A|G|2168
9DFD|1|1A|A|2169
9DFD|1|1A|A|2170
9DFD|1|1A|A|2171
9DFD|1|1A|U|2172
9DFD|1|1A|A|2173
9DFD|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA