IL_9DFE_038

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

9DFE|1|1A|U|1142, 9DFE|1|1A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9DFE|1|1A|C|1018
9DFE|1|1A|U|1019
9DFE|1|1A|A|1020
9DFE|1|1A|A|1021
9DFE|1|1A|G|1022
9DFE|1|1A|U|1023
9DFE|1|1A|G|1024
*
9DFE|1|1A|C|1140
9DFE|1|1A|U|1141
9DFE|1|1A|U|1142
9DFE|1|1A|A|1142|||A
9DFE|1|1A|A|1143
9DFE|1|1A|G|1144

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13